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Center for
Computation & Visualization

Brown University
Box 1824
94 Waterman Street
Providence, RI 02912

Phone: (401) 863-7557
Fax: (401) 863-9265

Documentation

Oscar Compute Cluster

Specifications
Accessing with SSH

Managing files

File systems
Restoring files
Data management
I/O strategies
Revision control with Git

Software

Available software
Software modules
Compiling
Linking
GUI software
Bioinformatics in BioMed@Brown

Running jobs

Interactive jobs
Queue overview and policies
Submitting jobs
Managing jobs
Job arrays

GPU computing

Accessing GPU nodes
Getting started with GPUs
Introduction to CUDA
Compiling with CUDA
Mixing MPI and CUDA

 

 

Getting Started PDFs

(Printable 1-page references.)

PDF What is HPC?
PDF Basic UNIX Commands
PDF Logging In
PDF Software Modules

RData

Rdata/CIFS setup
Modifying permissions

Tivoli Storage Manager

TSM download
TSM install guide
IBM docs

TeraGrid

Login

Workshop Slides

Bioinformatics Workshop 10/18/11
Summer Multi-day Workshop 2011

PDF "Effective Use of CCV Resources" 12/1/11
PDF "Parallel I/O Libraries and Techniques" 4/4/11
PDF "Profiling and Performance Analysis" 3/15/11
PDF "UNIX Tips and Tricks" 3/2/11
PDF "Programming with OpenMP and MPI" 2/17/11
PDF "Introduction to CCV" 1/31/11