DePristo, Mark A., Daniel L. Hartl and Daniel M. Weinreich (2007) Mutational Reversions During Adaptive Protein Evolution. Molecular Biology and Evolution 24:1608-1610. [ pdf]

Poelwijk, Frank J., Daniel J. Kivet, Daniel M. Weinreich and Sander J. Tans (2007) Empirical fitness landscapes reveal accessible paths. Nature 445:383-386. [ pdf]

Polz, Martin, Dana E. Hunt, Sarah P. Preheim and Daniel M. Weinreich (2006) Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Phil. Trans. Roy. Soc. B 361:2009-2021 [pdf]

Watson, Richard A., Daniel M. Weinreich, and John Wakeley (2006) Effects of Intra-gene Epistasis on the Benefit of Sexual Recombination. Biochemical Society Transactions 34:560-561. [pdf]

Weinreich, Daniel M., Nigel Delaney, Mark A. DePristo and Daniel L. Hartl (2006). Darwinian evolution can follow only very few mutational paths to fitter proteins. Science 312:111-114. [pdf] [Supporting Online Material] [Research Highlight in Nature Reviews Genetics]

Silander, Olin*, Daniel M. Weinreich*, Kevin Wright, Kara O'Keefe, Camilla U. Rang, Paul Turner and Lin Chao (2005). Widespread genetic exchange among terrestrial bacteriophage. Proc. Nat. Acad. Sci. USA 102:19009-19014. [pdf]
*These authors contributed equally to this work.

Weinreich, Daniel M. (2005). The Rank Ordering of Genotypic Fitness Values Predicts Genetic Constraint on Natural Selection on Landscapes Lacking Sign Epistasis. Genetics 171(3): 1397-1405. [pdf]

DePristo, Mark A, Daniel M. Weinreich and Daniel L. Hartl (2005). Missense meanderings through sequence space: a biophysical perspective on protein evolution. Nature Reviews Genetics 6(8):678-687. [pdf]

Weinreich, Daniel M., Richard A. Watson and Lin Chao (2005). Perspectives: Sign epistasis and constraint on evolutionary trajectories. (Cover article) Evolution 59:1165-1174. [pdf]

Weinreich, Daniel M. and Lin Chao (2005). Rapid evolutionary escape by large populations from local peaks is likely in nature. Evolution: 59:1175-1182. [pdf] [Supporting On line Material] News and Commentary in Heredity

Sheldahl, Lea, Daniel M. Weinreich and David M. Rand. (2003). Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: Contrasting patterns on the X and fourth chromosomes Genetics 165: 1195-1208. [pdf]

Lake-Bakaar, Gerrond, Linda Ruffini and Daniel M. Weinreich. (2002). Ultra-rapid molecular evolution of hepatitis C virus E2-HRV1 sequences after interferon and ribavirin. Gastroenterology 122: 473 Suppl.

Rand, David M, Daniel M. Weinreich and Brent O. Cezairliyan (2001). Neutrality tests of conservative-radical amino acid changes in nuclear- and mitochondrially-encoded proteins. Gene 291: 115-125. [pdf]

Weinreich, Daniel M. (2001). The rates of molecular evolution in rodent and primate mitochondrial DNA. J Molecular Evolution 52: 40-50. [pdf]

Weinreich, Daniel M. and David M. Rand (2000). Contrasting patterns of non-neutral evolution in proteins encoded in nuclear and mitochondrial genomes. Genetics 156: 385-399. [pdf]

Nielson, Rasmus and Daniel M. Weinreich (1999). The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory. Genetics 153: 497-506. [pdf]