@ARTICLE{Samanta2006,
  author = {Samanta, Manoj P. and Tongprasit, Waraporn and Istrail, Sorin and
	Cameron, R. Andrew and Tu, Qiang and Davidson, Eric H. and Stolc,
	Viktor},
  title = {The Transcriptome of the Sea Urchin Embryo},
  journal = {Science},
  year = {2006},
  volume = {314},
  pages = {960--962},
  number = {5801},
  abstract = {The sea urchin Strongylocentrotus purpuratus is a model organism for
	study of the genomic control circuitry underlying embryonic development.
	We examined the complete repertoire of genes expressed in the S.
	purpuratus embryo, up to late gastrula stage, by means of high-resolution
	custom tiling arrays covering the whole genome. We detected complete
	spliced structures even for genes known to be expressed at low levels
	in only a few cells. At least 11,000 to 12,000 genes are used in
	embryogenesis. These include most of the genes encoding transcription
	factors and signaling proteins, as well as some classes of general
	cytoskeletal and metabolic proteins, but only a minor fraction of
	genes encoding immune functions and sensory receptors. Thousands
	of small asymmetric transcripts of unknown function were also detected
	in intergenic regions throughout the genome. The tiling array data
	were used to correct and authenticate several thousand gene models
	during the genome annotation process.},
  date = {November 10, 2006},
  doi = {10.1126/science.1131898},
  owner = {Derek},
  timestamp = {2012.05.08},
  url = {http://www.brown.edu/Research/Istrail_Lab/papers/transcSeaUrchin.pdf},
  category = {Regulatory Genomics}
}