ISTRAIL LABORATORY :: BROWN UNIVERSITY
  115 Waterman Street • 5th floor • Box 1910 • Brown University • Providence, RI 02912













Brown University
Department of
Computer Science
HP 2D Algorithms The ProFOLDING Project
protein
sequence 		an initial fold an optimal fold 1/3 approx. fold
(with random
starting point) 		1/3 approx. fold
(the best) 		1/4 approx. fold
(the best) 		MC fold
 		map - 1/3 approx.
fold (the best)

20-9 20-9init 20-9opt 20-9rand 20-9best 20-9best1/4 20-9mc 20-9map

24-9 24-9init 24-9opt 24-9rand 24-9best 24-9best1/4 24-9mc 24-9map

25-8 25-8init 25-8opt 25-8rand 25-8best 25-8best1/4 25-8mc 25-8map

36-14 36-14init 36-14opt 36-14rand 36-14best 36-14best1/4 36-14mc 36-14map

48-23 48-23init - 48-23rand 48-23best 48-23best1/4 48-23mc 48-23map

50-21 50-21init - 50-21rand 50-21best 50-21best1/4 50-21mc 50-21map

60-36 60-36init - 60-36rand 60-36best 60-36best1/4 60-36mc 60-36map

64-42 64-42init - 64-42rand 64-42best 64-42best1/4 64-42mc 64-42map

85-53 85-53init - 85-53rand 85-53best 85-53best1/4 85-53mc 85-53map

100-48 100-48init - 100-48rand 100-48best 100-48best1/4 100-48mc 100-48map

100-50 100-50init - 100-50rand 100-50best 100-50best1/4 100-50mc 100-50map


! go to HP2D benchmarks page to view the protein chains as H|P strings