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Papers
1995
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1997
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1998
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1999
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2000
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2001
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2002
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2003
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2004
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2005
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2006
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2009
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Related Work
Allan Stewart Undergraduate Thesis
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Models
Discrete Models for Protein Folding
- Protein Structure Prediction (PSP)
- Lattice Polymer Embedding (LPE)
- Charged Graph Embedding (CGE)
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Hydrophobic-Polar (HP)
- HP Model on Lattices
- HP Model with Side-Chains (APS thesis)
- Off-Lattice HP Model
- HP Model on General Lattices
- Accessible Surface Area Lattice Model
Benchmarks
HP-2D | HP-3D
New FCC Lattice-fit Proteins
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Algorithms
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Approximation Algorithms
- Performance-Guaranteed
- No Performance-Guaranteed
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Exact Algorithms
- Enumerative
- Constraint Programming
- Integer Programming
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Heuristics
- Monte Carlo Algorithms
- Genetic Algorithms
- ACO Algorithms
Implementations
- HP on Lattices
- HP with Side Chains
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Protein that has been folding for 11 years on Scientific American
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