ARCH Publications


  1. Bednarski SR, Erdman E, Luo X, Zhang S, Hu S, Li CS (2012). Neural processes of an indirect analog of risk taking in young nondependent adult alcohol drinkers-an FMRI study of the stop signal task. Alcoholism: Clinical and Experimental Research. 36, 768-79. PMCID: PMC3647608.
  2. Bryant VE, Kahler CW, Devlin KN, Monti PM, Cohen RA. The effects of cigarette smoking on learning and memory performance among people living with HIV/AIDS. Journal of AIDS Care. 2013;25(10):1308-16.  PMCID: PMC3672313.
  3. Bunea F, She Y, Ombao H, Gongvatana A, Devlin K, Cohen R (2011). Penalized least squares regression methods and applications to neuroimaging. Neuroimage. 55,1519-27. PubMed PMID: 21167288.  
  4. Clark US, Cohen RA, Sweet LH, et al. Effects of HIV and early life stress on amygdala morphometry and neurocognitive function. Journal of the International Neuropsychological Society. Jul 2012;18(4):657-668. PMC3575741 
  5. Cohen RA, de la Monte S, Gongvatana A, et al. Plasma cytokine concentrations associated with HIV/hepatitis C coinfection are related to attention, executive and psychomotor functioning. Journal of Neuroimmunology. Apr 2011;233(1-2):204-210. PMC3074016 
  6. Correia S, Cohen R, Gongvatana A, et al. Relationship of plasma cytokines and clinical biomarkers to memory performance in HIV. Journal of Neuroimmunology. Dec 15 2013;265(1-2):117-123. doi: 10.1016/j.jneuroim.2013.09.005. Epub 2013 Sep 27  PMID:  24210837
  7. Daniels MJ, Roy JA, Kim C, Hogan JW, Perri MG. Bayesian inference for the causal effect of mediation. Biometrics. 2012 Dec;68(4):1028-36. PMID: 23005030; PMCID: PMC3927554.
  8. Devlin KN, Gongvatana A, Clark US, et al. Neurocognitive effects of HIV, hepatitis C, and substance use history. Journal of the International Neuropsychological Society. Jan 2012;18(1):68-78. doi: 10.1017/S1355617711001408. Epub 2011 Dec 2.  PMID:22132928
  9. Elofson J, Gongvatana A, Carey KB. Alcohol use and cerebral white matter compromise in adolescence. Addictive Behaviors. 2013 Jul;38(7):2295-305. doi: 10.1016/j.addbeh.2013.03.001. Epub 2013 Mar 15. Review, Addictive Behaviors.  2013, PMID:23583835 | PMCID:PMC3699185
  10. Fiecas, M. and Ombao, H. (2011).The Generalized Shrinkage Estimator for the Analysis of Functional Connectivity of Brain Signals. Annals of Applied Statistics. 5, 1102-1125.
  11. Gongvatana A, Cohen RA, Correia S, Devlin KN, Miles J, Kang H, Ombao H, Navia  B, Laidlaw DH, Tashima KT (2011). Clinical contributors to cerebral white matter integrity in HIV-infected individuals. Journal of Neurovirology. 17, 477-86. PMCID:PMC3915930
  12. Gongvatana A, Harezlak J, Buchthal S, et al. Progressive cerebral injury in the setting of chronic HIV infection and antiretroviral therapy. Journal of Neurovirolology. Jun 2013;19(3):209-218. PMC3740160
  13. Gorrostieta C, Ombao H, Bédard P, Sanes JN (2012). Investigating brain connectivity using mixed effects vector autoregressive models. Neuroimage. 59(4), 3347-55. PMID: 22001164.  
  14. Harezlak J, Buchthal S, Taylor M, Schifitto G, Zhong J, Daar E, Alger J, Singer E, Campbell T, Yiannoutsos C, Cohen R, Navia B. HIV Neuroimaging Consortium. Persistence of HIV-associated cognitive impairment, inflammation, and neuronal injury in era of highly active antiretroviral treatment. AIDS. 2011 Mar 13;25(5):625-33. PMID: 21297425. doi: 10.1097/QAD.0b013e3283427da7.
  15. Kahler CW, Wray TB, Pantalone DW, Mastroleo NR, Kruis R, Mayer KH, Monti PM. (in press). Assessing Sexual Motives for Drinking Alcohol among HIV-Positive Men who have Sex with Men. Psychology of Addictive Behaviors.
  16. Kang H, Ombao H, Linkletter C, Long N and Badre D. (2012). Spatio-Spectral Mixed Effects Model for Functional Magnetic Resonance Imaging Data. Journal of the American Statistical Association. 107, 568-577.  
  17. Kamanda AM, Ayuku DO, Ojwang C, Owino-Ong'or WD, Harrington M, Bryant KJ, Carroll KM, Justice AC, Hogan JW, Maisto SA (2011). Treatment outcomes of a stage 1 cognitive-behavioral trial to reduce alcohol use among human immunodeficiency virus-infected out-patients in western Kenya. Addiction. 106, 2156-66. PMCID:PMC3208780
  18. Kwei K, Tang X, Lok AS, Sureau C, Garcia T, Li J, Wands J, Tong S. Impaired virion secretion by hepatitis B virus immune escape mutants and its rescue by wild-type envelope proteins or a second-site mutation. Journal of Virology. 2013 Feb;87(4):2352-7. PMID: 23221548; PMCID: PMC3571463.
  19. Li M, Aliotta JM, Asara JM, Tucker L, Quesenberry P, Lally M, Ramratnam B. Quantitative proteomic analysis of exosomes from HIV-1-infected lymphocytic cells. Proteomics. 2012 Jul;12(13):2203-11. doi: 10.1002/pmic.201100376., Proteomics.  2012, PMID:22807456 | PMCID:PMC3815571
  20. Li M, Patton DL, Cosgrove-Sweeney Y, Ratner D, Rohan LC, Cole AM, Tarwater PM, Gupta P, Ramratnam B. Incorporation of the HIV-1 microbicide cyanovirin-N in a food product. Journal of Acquired Immune Deficiency Syndromes. 2011 Dec 1;58(4):379-84. doi: 10.1097/QAI.0b013e31823643fe. PMID:21926631 | PMCID:PMC3440868
  21. Li T, Huftless S, Scharfstein DO, Daniels MJ, Hogan JW, Little RJA, Roy JA, Law AH, Dickersin K (2014).  Standards should be applied in the prevention and handling of missing data for patient-centered outcomes research:  A systematic review and expert consensus.  Journal of Clinical Epidemiology 67, 15-24. PMID24262770
  22. Little RJ, D'Agostino R, Cohen ML, Dickersin K, Emerson SS, Farrar JT, Frangakis C, Hogan JW, Molenberghs G, Murphy SA, Neaton JD, Rotnitzky A, Scharfstein D, Shih WJ, Siegel JP, Stern H. The prevention and treatment of missing data in clinical trials. New England Journal of Medicine. 2012 Oct 4;367(14):1355-60. PMID: 23034025; PMCID: PMC3771340.
  23. Liu J, Cohen RA, Gongvatana A, Sheinkopf SJ, Lester BM. Impact of prenatal exposure to cocaine and tobacco on diffusion tensor imaging and sensation seeking in adolescents. Journal of Pediatrics. 2011 Nov;159(5):771-5. doi: 10.1016/j.jpeds.2011.05.020. PMID:21723565 | PMCID:PMC3420810
  24. Luo X, Zhang S, Hu S, Bednarski SR, Erdman E, Farr OM, Hong K, Sinha R, Mazure CM, Li CS (2013).  Cognitive control and gender specific neural predictors of relapse in cocaine dependence. Brain, 2013 Apr, 136 (Pt 4), 1231-1244. PMID: 23485852.
  25. Luo X, Zhang S, Hu S, Bednarski SR, Erdman E, Farr OM, Hong KI, Sinha R, Mazure CM, Li CS (2013). Error processing and gender-shared and -specific neural predictors of relapse in cocaine dependence. Brain 136, 1231-1244. PMCID: PMC3613717
  26. Nunn A, Dickman S, Cornwall A, Kwakwa, H, Mayer K, Rosengard C. African American Women Speak out about Concurrent Sexual Partnerships: Results from a Qualitative Study in Philadelphia. Sexual Health, 9(3):288-96, Jan 2012. doi: 10.1071/SH11099.
  27. Nunn A, Dickman S, Cornwall A, Rosengard C, Kwakwa H, Kim D, James G, Mayer K. Social, structural, and behavioral drivers of concurrent partnerships among African American men in Philadelphia. AIDS Care23(11):1392-1399, 2011. PMCID: PMC3202040
  28. Nunn A, Yolken A, Cutler B, Trooskin S, Wilson P, Little S, Mayer K. Geography Shouldn’t be Destiny: Focusing HIV/AIDS implementation research and programs on microepidemics in American neighborhoods. In Press, American Journal of Public Health, February 2014.
  29. Nunn A, Zaller N, Cornwall A, Mayer KH, Moore E, Dickman S, Beckwith C, Kwakwa H. Low perceived risk and high HIV prevalence among a predominantly African American population participating in Philadelphia's Rapid HIV testing program. AIDS Patient Care and STDS. 2011 Apr;25(4):229-35. doi: 10.1089/apc.2010.0313. Epub 2011 Mar 15. PMID:21406004 | PMCID:PMC3068868
  30. Papas RK, Sidle JE, Gakinya BN, Baliddawa JB, Martino S, Mwaniki MM, Songole R, Omolo OE, Tate DF, Delong A, McCaffrey DE, Kertesz K, Paul RH, Conley J, Russell T, Coop K, Gillani F, Flanigan T, Tashima K, Hogan JW (2011). Recent clinical history and cognitive dysfunction for attention and executive function among human immunodeficiency virus-infected patients. Archives of Clinical Neuropsychology. 26, 614-23. PMCID: PMC3243921
  31. Papas R, Sidle J, Gakinya B, Baliddawa J, Martino S, Mwanik M, Songole R, Omol O, Kamanda A, Ayuku D, Ojwang C, Owino-Ong'or W, Harrington M, Bryant K, Carroll K, Justice A, Hogan JW, Maisto S (2011).  Treatment outcomes of a stage-1 cognitive-behavioral trial to reduce alcohol use among HIV-infected outpatients in western Kenya.  Addiction 106, 2156-2166. PMCID: PMC3208780
  32. Seider TR, Luo X, Gongvatana A, et al. Verbal memory declines more rapidly with age in HIV infected versus uninfected adults. Journal of Clinical and Experimental Neuropsychology. Mar 19 2014 [Epub ahead of print] PMID:24645772
  33. Sison N, Yolken A, Poceta J, Mena L, Chan PA, Barnes A, Smith E, Nunn A. Healthcare provider attitudes, practices, and recommendations for enhancing routine HIV testing and linkage to care in the Mississippi Delta region. AIDS Patient Care and STDS. 2013 Sep;27(9):511-7. doi: 10.1089/apc.2013.0169 PMID:23991689 | PMCID:PMC3760055
  34. Tang X, Li M, Tucker L, Ramratnam B. Glycogen synthase kinase 3 beta (GSK3β) phosphorylates the RNAase III enzyme Drosha at S300 and S302. PLoS One. 2011;6(6):e20391. doi: 10.1371/journal.pone.0020391. Epub 2011 Jun 3. PMID:21674040 | PMC3108596
  35. Tate DF, Sampat M, Harezlak J, Fiecas M, Hogan J, Dewey J, McCaffrey D, Branson D, Russell T, Conley J, Taylor M, Schifitto G, Zhong J, Daar ES, Alger J, Brown M, Singer E, Campbell T, McMahon D, Tso Y, Matesan J, Letendre S, Paulose S, Gaugh M,Tripoli C, Yiannoutsos C, Bigler ED, Cohen RA, Guttmann CR, Navia B, HIV Neuroimaging Consortium. Regional areas and widths of the midsagittal corpus callosum among HIV-infected patients on stable antiretroviral therapies. Journal of Neurovirology. 2011 Aug;17(4):368-79. doi: 10.1007/s13365-011-0033-6. Epub 2011 May 10. PMID: 21556960; NIHMSID: 545977.
  36. Trillo AD, Merchant RC, Baird JR, Ladd GT, Liu, T, and Nirenberg TD. Interrelationship of alcohol misuse, HIV sexual risk and HIV screening uptake among emergency department patients. BMC Emergency Medicine. 2013;13(1):9. PMC3686630
  37. Wray T, Merrill J, & Monti PM.  (in press).  Using Ecological Momentary Assessment (EMA) to assess situation-level risk factors for heavy drinking and alcohol-related consequences. Alcohol Research: Current Reviews.  PMC in progress
  38. Zhu T, Cohen R, Harezlak J, Ombao H, Navia B and Schiffito G. (2013). Patterns of CNS injury in HIV infection after partial immune reconstitution: A DTI tract-based spatial statistics study. Human Brain Mapping. 19, 10-23.