Principal Investigator

Stephanie Jones, PhDStephanie Jones, PhD
Stephanie R. Jones, PhD

Curriculum vitae

Dr. Stephanie Jones received her doctorate in Mathematics, with a concentration in Dynamical Systems Theory, from Boston University in 2001. She pursued post-doctoral training in human brain imaging focusing on MEG/EEG at the Martinos Center for Biomedical Imaging at Massachusetts General Hospital. Integrating her mathematical and experimental training, she currently designs biophysically principled mathematical models of neural circuits to study the mechanisms and meaning of human brain dynamics. Her focus is on developing data-constrained models that are translationally relevant. She joined the faculty in the Department of Neuroscience at Brown University in 2011. Dr. Jones trains a diverse group of post-doctoral, graduate and undergraduate students including those from the Neuroscience, Applied Mathematics and Biomedical Engineering Departments. 

Research Scientists/Faculty

Sam NeymotinSam NeymotinSamuel Neymotin, PhD

In collaboration with Stephanie Jones and researchers at MGH/Yale, I am working on the Human Neocortical Neurosolver (HNN) project. HNN is an open-source neural modeling tool designed to help researchers/clinicians interpret the neural origin of their human EEG, MEG, or ECoG imaging data. Our goal is to design HNN to be useful to researchers with no formal computational neural modeling experience who want to develop and test hypotheses on the cellular/circuit level generators of source localized human data. I also develop data driven multiscale models of the brain and methods of analysis for electrophysiological data in order to better understand neural dynamics and computation. 

Simona Temereanca IbanescuSimona Temereanca IbanescuSimona Temereanca Ibanescu, PhD

My work investigates brain mechanisms and brain-body interactions in meditative movement practice, with a focus on clinical outcomes in patient populations. In collaboration with Dr. Stephanie Jones and a team of investigators, I design clinical trials and develop data analysis methods to study the impact of qigong on fatigue in cancer survivors, integrating multi-modal physiological and clinical measures including EEG, EMG, EKG, blood markers, and behavioral assays.


Postdoctoral Researchers

Robert Law, PhDRobert Law, PhDRobert Law, PhD

In collaboration with Professor Stephanie Jones, I am using a computational model of somatosensory cortex to address how beta-band events affect perception. The energy in the beta band before a tactile stimulus (e.g. a fingertap) is a strong indicator of whether that stimulus will be reported, and the neural activity putatively underlying that perception also leaves a trace in the event-related potential: a high level of beta not only blocks perception but affects this potential in a consistent way. Our modeling efforts are aimed at disentangling the neural mechanisms responsible for this effect.

Shane Lee, PhDShane Lee, PhDShane Lee, PhD

I am primarily interested in understanding the neural pathology of Essential Tremor (ET) and Parkinson's Disease (PD). My work, here with Stephanie's group and the lab of Wael Asaad, combines behaviorally-framed intraoperative and postoperative electrophysiology and biophysically-relevant computational modeling to understand (1) how motor activity is represented in the cerebellar motor system (via cerebellar motor thalamus and motor cortical areas) and (2) markers of disease in ET and PD. Specifically, I am interested in cerebellar thalamocortical and basal gangliar representations of tremor, error correction, and movement. My computational modeling of the thalamocortical circuit is focused on understanding mechanisms of deep brain stimulation (DBS), toward optimization of DBS protocols to improve efficacy for patients.

Another active area of research includes understanding functional implications of oscillatory activity in laminar neocortex. With others in the lab, we are modeling the genesis of short-time beta periodic events to understand how they may be expressed and used in somatosensory cortex. In a collaboration with Nancy Kopell and Miles Whittington, I am also modeling auditory cortical gamma oscillations to understand how sensory signals may be routed through distinct cortical lamina, with implications for repetition priming and suppression. 

Graduate Students

Chloe ZimmermanChloe ZimmermanChloe Zimmerman

My research focuses on the way that neural and cardiovascular rhythms are altered by brain-body exercises such as mindfulness, qigong, or yoga.  While these practices have grown in popularity, less is understood about the cellular and physiologic changes that are associated with symptom improvement in a variety of patient populations.  In collaboration with Dr. Stephanie Jones, I work on a clinical trial designed for fatigued cancer survivors comparing a qigong course to a standard exercise course.  Using EEG, EMG, ECG, blood measures of inflammation, and musculoskeletal strength, we examine underlying dynamical interactions between brain and bodily systems that are associated with therapeutic changes commonly reported from participants taking part in such brain-body interventions.  I am particularly focused on the complex role of the parasympathetic vagus nerve in modulating the rhythms of the heart, and the importance of this interaction for giving rise to the behavioral level feelings of vitality, resilience, restoration, and recovery in a variety of populations including cancer survivors, chronic pain patients, and burned out healthcare providers.

Chris BlackChris BlackChris Black

Non-invasive, low-intensity, electric stimulation has been used as a therapeutic treatment for neurological disorders since the early 1900's.  While it is strongly accepted that this type of stimulation regulates neural activity to elicit some effect, the specific mechanisms of how such externally generated electric fields interact with ongoing neural activity is not well defined.  To this point, we are studying the effects of transcranial alternating current stimulation (tACS) on normal cutaneous sensory processing. Using both human electrophysiology studies (EEG) and neural modeling techniques we are piecing together how the perturbation of groups of neurons leads to unique dynamics that produce perceived behaviors.

Danielle SliDanielle SlivaDanielle Slivava

My research focuses on using non-invasive stimulation to probe and modulate somatosensory processing and perception in humans. Transcranial magnetic stimulation (TMS) is a safe and non-invasive tool that is used clinically for treatment-resistant depression and pre-surgical motor and language mapping. It also shows great potential for treatment of several other disorders; of particular interest, this includes autism, chronic pain, and Parkinson's disease, which are associated with aberrant somatosensory processing and/or rhythmic brain activity. Our goal is to understand how TMS affects cortical excitability at the circuit level, leading to large scale changes in macroscopic activity, and how this relates to augmentation and inhibition of tactile perception. To accomplish this, we utilize a multimodal approach, incorporating simultaneous human electrophysiology (EEG) and TMS informed by MRI and computational modeling. 

Hyeyoung ShinHyeyoung ShinHyeyoung Shin

My research focuses on the neocortical processing of sensory perception. I am specifically interested in the role of gamma oscillations (30-80Hz component of local field potential) in sensory encoding. To this end, I am conducting chronic extracellular electrophysiology recordings in the barrel cortex of mice performing a vibrissae deflection detection task. Detection at the perceptual threshold level is a process known to be dependent on the primary sensory area of the neocortex. Gamma oscillations have been widely observed in correlation to higher cognitive processes such as attention and learning. Notably, gamma in the primary sensory area has been causally linked to enhanced performance in threshold level detection. The goal of my study is to probe the mechanistic details underlying gamma-mediated enhancement of sensory encoding. In addition to electrophysiology experiments, I am constructing a biophysically plausible model of the barrel column microcircuitry governing sensory encoding. I aim to employ computational modeling to constrain plausible inverse solutions that can explain observed electrophysiological phenomena.

Prannath MoolchandPrannath MoolchandPrannath Moolchand

I am currently working on a collaborative project between the Frank and the Jones labs, combining systems level and biophysical modeling to understand the modulation of theta power in the Subthalamic Nucleus during response conflict.

We are also investigating the possibility that the cortico-subthalamic topography may allow the Subthalamic Nucleus to integrate cortical information to detect response conflict itself, and thereby prevent gating of motor responses in the cortico-thalamic loop via the Basal ganglia. 

Research Technicians

Dylan DanielsDylan DanielsDylan Daniels

I am working with the Jones lab on the Human Neocortical Neurosolver (HNN) software, which is an open-source neuromodeling tool that allows for interpretation of potential origins of source-localized MEG/EEG/ECoG data based on the biophysical properties of the underlying neural circuits. I am also involved in the lab's research investigating the brain-body interactions that arise from meditative movement practices such as qigong. 


Juan F. Santoyo

My research in the Jones Lab focuses on the study of cortical rhythms in humans and the use of non-invasive techniques for manipulating cortical rhythms. This work has involved using EEG, transcranial current stimulation techniques, EEG-based neurofeedback, and meditation as tools for studying how the manipulation of cortical rhythms influences perception and behavior in humans. Specifically, I am currently overseeing a project in which we are using EEG-based neurofeedback to attempt to identify meditation strategies for modulating clinically relevant neurophysiological signals. I also currently work in the Barnea Lab and through this and my work in the Jones Lab, I am currently focused in preparing for graduate school and for future work as a researcher in systems neuroscience.

Undergraduate Researchers

Cooper PennerCooper PennerCooper Penner

Cooper is a Senior at Brown, his primary focus is on utilizing complex systems analysis to understand mind body therapies.


Halle Vernon

Bio forthcoming

Sarah Pugliese

Sarah is a sophomore concentrating in Applied Mathematics-Biology with an emphasis in neuroscience.

HNN Software Research and Development

The following computer science undegraduate/MS students are assisting in research and development of the Human Neocortical Neurosolver (HNN):

Jerome Ramos
Julian Levy-Meyers
Lucas Kasser
Michael Ball
Seungbo Choi


Brown Collaborators

Barry Connors
Ben Greenberg
Carl Saab
Catherine Kerr
Christopher Moore
David Borton
Michael Frank
Wael Asaad 

Other Collaborators

Alexandre Gramfort, ParisTech
Charles Schroeder, Columbia U.
Matti Hamalainen, MGH
Saski Haegens, Columbia U./Donders



Carolina Santiago
Julie Guerin
Mathew Sacchet
Maxwell Sherman
Nathan Vierling-Claasen
Paul Bowary
Quan Wan 
Roan Laplante
Shawn Tsutsui
Tariq Cannonier