D. P. Papageorgiou, S. Z. Abidi, H.-Y. Chang, X. J. Li, G. J. Kato, G. E. Karniadakis, M. Dao, and S. Suresh, “Simultaneous polymerization and adhesion under hypoxia in sickle cell anemia.” P.N.A.S. U.S.A. 2018, in revision.
H. Li, L. Lu, X. Li, P. Buffet, M. Dao, G. E. Karniadakis, and S. Suresh, “Mechanics of diseased red blood cells in human spleen and consequences for hereditary blood disorders.” P.N.A.S. U.S.A. 2018, in revision.
Y. Yoshimoto, Z. Li, L. Kinefuchi and G.E. Karniadakis. “Construction of non-Markovian coarse-grained models employing the Mori-Zwanzig formalism and iterative Boltzmann inversion.” J. Chem. Phys. 147: 244110. 2017. (Selected as Editor's Pickfeatured article).
L. Lu, H Li, X. Bian, X. Li, G.E. Karniadakis, “Mesoscopic adaptive resolution scheme: toward understanding of interactions between sickle cell fibers.” Biophys. J. (COVER).113(1):48-59. 2017.
A. Yazdani, M. Deng, B. Caswell and G.E. Karniadakis, “Flow in complex domains simulated by Dissipative Particle Dynamics driven by geometry-speciﬁc body-forces.” J. Comp. Phys. 305, 906-920, 2016.
A. Witthoft, A. Yazdani, Z. Peng, C. Bellini, J.D. Humphrey and G.E. Karniadakis, “A discrete particle model of a multilayerd ﬁber-reinforced arterial wall.” J. Roy. Soc. Interface, 13, 20150964, 2016.
A. Yazdani and G.E. Karniadakis, “Sub-cellular modeling of platelet transport in blood ﬂow through microchannels with constriction.” Soft Matter, 12, 4339, 2016.
X.J. Li, E. Du, H. Lei, Y.-H. Tang, M. Dao, S. Suresh and G.E. Karniadakis, “Patient-speciﬁc modeling and predicting blood viscosity in sickle -cell anemia.” Interface Focus, 6, 20150065, DOI: 10.1098/rsfs.2015.0065 2016.
Y.-H. Tang, Z. Li, X.J. Li, M.G. Deng and G.E. Karniadakis, “Non-equilibrium dynamics of vesicles and micelles by self-assembly of block copolymers with double thermoresponsivity.” Macromolecules, 59, 2895-2903, 2016.
D.A. Steinman et al., “Variability of Computational Fluid Dynamics Solutions for pressure and ﬂow in a giant aneurysm: The ASME 2012 Summer Bioengineering Conference CFD Challenge.” J. Biomech. Engin. 135(2):021016, 2013
W. Pan*, D. Fedosov*, B. Caswell, and G.E. Karniadakis, “Predicting dynamics and rheology of blood ﬂow: A comparative study of multiscale and low-dimensional models of red blood cells.” Microvas. Res. 82(2), 163-170, 2011.
H. Lei, D. A. Fedosov, G. E. Karnidakis, "Time-dependent and outflow boundary conditions for Dissipative Particle Dynmics." J. Comput. Phys. 230, 3765-3779, 2011.
M. Arienti, W. Pan*, X. Li, and G.E. Karniadakis, “Many-body dissipative particle dynamics simulation of liquid/vapor and liquid/solid interactions.” J. Chem. Phys. 134, 204114, 2011.
D. Fedosov*, B. Caswell, S. Suresh and G.E. Karniadakis, “Quantifying the biophysical characteristics of Plasmododiumfalciparum-parasitized red blood cells in microcirculation.” P.N.A.S. 108, 35-39, 2011.
D. Quinn, I. Pivkin, S.Y. Yong, K.-H. Chiam, M. Dao, G.E. Karniadakis and S. Suresh, “Combined simulation and experimental study of large deformation of red blood cells in microﬂuidic systems.” Ann. Biomed. Engin. 39(3), 1041-1050, 2011.
L. Grinberg* and G.E. Karniadakis, “Extrapolation-based acceleration of iterative solvers: Application to simulation of 3D ﬂows.” Commun. Comput. Phys. 9, 607-626, 2011.
T. Anor, L. Grinberg*, H. Baek, M. Jayraman, J.R. Madsen and G.E. Karniadakis, “Modeling of blood ﬂow in arterial trees.” Wiley Interdiscip. Rev. Syst. Biol. Med. 2(5), 612-623, 2010.
L. Grinberg*, E. Cheever*, T. Anor, J.R. Madsen and G.E. Karniadakis, “Modeling blood ﬂow circulation in intracranial arterial networks: A comparative 3D/1D simulation study.” Ann. Biomed. Engin. 39, 297-309, 2010.
H. Baek*, M.V. Jayaraman, P.D. Richardson and G.E. Karniadakis, “Flow instability and wall shear stress variation in intracranial aneurysms.” J. R. Soc. Interface. 7(47), 967-988, 2010.
D. Fedosov*, B. Caswell, A. Popel and G.E. Karniadakis, “Blood ﬂow and cell-free layer in microvessels.” Microcirculation, 17(8), 615-628, 2010.
W. Pan*, B. Caswell and G.E. Karniadakis, “A low-dimensional model for the red blood cell.” Soft Matter. 6, 4366-4376, 2010.
D. Fedosov*, B. Caswell and G.E. Karniadakis, “Systematic coarse-graining of spectrin-level red blood cell models.” Comput. Methods Appl. Mech. Engin. 199(29-32): doi:10.1016/j.cma.2010.02.001. 2010.
D. Fedosov*, B. Caswell and G.E. Karniadakis, “A multiscale red blood cell model with accurate mechanics, rheology and dynamics.” Biophys. J. 98, 1-11, 2010.
H. Baek*, M.V. Jayaraman and G.E. Karniadakis, “Wall shear stress and pressure distribution on aneurysms and infundibulae in the posterior communicating artery bifurcation.” Ann. Biomed. Engin. 37(12), 2469-2487, 2009.
I. Pivkin*, P. Richardson and G.E. Karniadakis, “Effect of red blood cells on platelet aggregation.” IEEE Engineering in Medicine & Biology Magazine, 28(2), 32-37, March-April 2009.
L. Grinberg*, A. Yakhot and G.E. Karniadakis, “Analyzing transient turbulence in a stenosed artery by Proper Orthogonal Decomposition.” Ann. Biomed. Engin. 37(1), 2200-2217, 2009.
X. Li, I. Pivkin*, H. Liang and G.E. Karniadakis, “Shape transformations of membrane vesicles from amphiphilic triblock copolymers: A Dissipative Particle Dynamics simulation study.” Macromolecules, 42, 3195-3200, 2009.
J. Foo*, S. Sindi and G.E. Karniadakis, “Multi-element probabilistic collocation for sensitivity analysis in cellular signaling networks.” IET Systems Biology, 3 (4), 239-254, 2009.
D. Fedosov, G. E. Karniadakis, "Triple-decker: Interfacing atomistic-mesocopic-continuum flow regimes." J. Comp. Phys. 228, 1157-1171, 2009.
L. Grinberg*, T. Anor, E. Cheeve, J. R. Madsen and G. E. Karniadakis, “Simulation of the Human Intracranial Arterial Tree.” Phil. Trans. R. Soc. A. 367, 2371-2386, 2009.
L. Grinberg*, T. Anor, J.R. Madsen, A. Yakhot and G.E. Karniadakis, “Large-Scale Simulation of the Human Arterial Tree.” Clin. Exp. Pharmacol. Physiol.36(2):194-205, 2009.
A. Yakhot, T. Amor and G.E. Karniadakis, “A reconstruction method for gappy and noisy arterial ﬂow data.” IEEE Transactions on Medical Imaging, 26(12), 1681-1697, 2007.
V. Symeonidis, G. E. Karniadakis, B. Caswell, ''Schmidt number effects in simulation of polymer dissipative particle dynamics.'' J. Chem. Phys. 125, 184902, 2006.
I. Pivkin*, P.D. Richardson and G.E. Karniadakis, “Blood ﬂow velocity effects and role of activation delay time on growth and form of platelet thrombi.” P.N.A.S. 103(46), 17164, 2006.
P.D. Richardson, I. Pivkin*, G.E. Karniadakis, and D.H. Laidlaw “Blood ﬂow at arterial branches: Complexities to resolve at the angioplasty suite.” Lecture Notes in Computer Science, 3993, 538-545, 2006.
I. Pivkin* and G.E. Karniadakis, “Controlling density ﬂuctuations in wall-bounded dissipative particle dynamics systems.” Phys. Rev. Lett. 96(20), 206001, 2006.
I. Pivkin* and G.E. Karniadakis, “Coarse-graining limits in open and wall-bounded DPD systems.” J. Chem. Phys. 124, 184101, 2006.
E. Keaveny, I. Pivkin, M. Maxey, G. E. Karniadakis, ''A comparative study between dissipative particle dynamics and molecular dynamics for simple- and complex-geometry flows.'' J. Chem. Phys. 123, 104107, 2005.
J. Xu, S. Dong, M. Maxey, G. E. Karniadakis, ''Wall slippage effect in microbubble drag reduction.'' 2nd International Symposium on Seawater Drag Reduction, Busan, Korea, May 23-26, 2005.
V. Symeonidis*, G.E. Karniadakis and B. Caswell, “Dissipative particle dynamics simulations of polymer chains: Scaling laws and shearing response compared to DNA experiments.” Phys. Rev. Lett, 95, 076001, 2005.
I. Pivkin*, P.D. Richardson, D.H. Laidlaw and G.E. Karniadakis, “Combined effects of pulsatile ﬂow and dynamic curvature on wall shear stress in a coronary artery bifurcation model.” J. Biomech. 38, 1283-1290, 2005.
I. Pivkin* and G.E. Karniadakis, “A new method to impose no-slip boundary conditions in dissipative particle dynamics.” J. Comp. Phys. 207, 114-128, 2005.
V. Symeonidis*, G.E. Karniadakis and B. Caswell, “A seamless approach to multiscale complex ﬂuid simulation.” Comput. Sci. Engin. 7, 39-46, May/June 2005.
D. Liu, M. Maxey, G. E. Karniadakis, ''FCM-spectral element method for simulating colloidal micro-devices.'' 2nd MIT Conference on Computational Fluid and Solid Mechanics edited by K. J. Bathe, June 17-20, 2003.
S. J. Sherwin, E. Barough, S. A. Orszag, G. E. Karniadakis, ''Application of an ENO scheme to simulate the ion etching process.'' Proc. Fourth Int. Conf. on Hyperb. Problems, Taormina, Italy, April, 1992.
A. Beskok, G. E. Karniadakis, ''Simulation of slip-flows in complex micro-geometries.'' Proc. ASME, Winter Annual Meeting, Anaheim, CA, 1992.
M.K. Sharp, R. D. Kamm, A.H. Shapiro, E. Kimmel & G.E. Karniadakis, “Dispersion in a curved tube during oscillatory ﬂow.” J. Fluid Mech. 223, 537, 1991.