Publications

Publications

2020

MC Burkhart, DM Brandman, B. Franco, LR Hochberg, MT Harrison.  The Discriminative Kalman Filter for Bayesian Filtering with Nonlinear and Nongaussian Observation Models.  Neural Computation 32 (5), 969-1017.  

C Lawrence et al.  Capivasertib Plus Paclitaxel Versus Placebo Plus Paclitaxel as First-Line Therapy for Metastatic Triple_Negative Breast Cancer:  The PAKKT Trial.  Journal of Clinical Oncology 38 (5), 423-433.

J. Loper, G. Zhou, and S. Geman. Capacities and efficient computation of first-passage probabilities. Physical Review E, (2020--in press)

2019

Guangyao Zhou, Jackson Loper, Stuart Geman:
Base-pair ambiguity and the kinetics of RNA folding. BMC Bioinform. 20(1): 666 (2019)

M.A. Paradiso, S. Akers-Campbell, O. Ruiz, J. Niemeyer, S. Geman, and J. Loper. Transsacadic information and corollary discharge in local field potentials of macaque V1. Frontiers in Integrative Neuroscience, vol. 12, article 63, 2019. 

MQ Ott, MT Harrison, KJ Gile, NP Barnett, and JW Hogan.  Fixed choice design and augmented fixed choice design for network data with missing observations.  Biostatistics 20 (1), 97-110.

MQ Ott, KJ Gile, MT Harrison, LG Johnson, JW Hogan.  Reduced bias for respondent-driven sampling: accounting for non-uniform edge sampling probabilities in people who inject drugs in Mauritius.  Journal of the Royal Statistical Society: Series C (Applied Statistics) 68, 5, 1411-1429.  

2018

DM Brandman et al.  Robust closed-loop control of a cursor in a person with tetraplegia using gaussian process regression. Neural computation 30 (11) 2986-3008.  

JW Miller, MT Harrison.  Mixture models with a prior on the number of components.  Journal of the American Statistical Association 113 (521), 340-356

RE Kass, et al.  Computational neuroscience:  Mathematical and statistical analysis of neural codes.  Annual Review of Statistics and its Application, Vol 5: 183-214 (2018)  

JB Winbourse, MT Harrison et al.  A new framework for evaluating estimates of symbiotic nitrogen fixation in forests.  The American Naturalist 192 (5) 618-629.

2017

L.-B. Chang, E. Borenstein, W. Zhang, and S. Geman. Maximum likelihood features for generative image models. Annals of Applied Statistics, vol. 11(3), 2017, 1275-1308.

Charles Lawrence, et al.  Design and methods of the Population Assessment of Tobacco and Health (PATH) Study. Tobacco Control 26 (4) 371-378.

J Dahlby, A Marsavin, C Lawrence, LY Pavlovskaia.  Providing television broadcasts over a managed network and interactive content over an unmanaged network to a client device.  US Patent 9,826,197

C Lawrence et al.  Genome-wide association analysis implicaes dysregulation of immunity genes in chronic lymphocytic leukaemia.  Nature Communications. 8 (1), 1-12

C Lawrence et al.  Arginine deprivation with pegylated arginine deiminase in patients with argininosuccinate synthetase 1-deficient malignant pleural mesothelioma: A randomized clinical trial.  JAMA Oncologyo 3 (1), 58-66.

S Ahn, D Khider, LE Lisiecki, CE Lawrence.  A probabilistic Pliocene-Plestocene stack of benthic 180 using a profile hidden Markov model.  Dynamics and Statistics of the Climate System 2 (1)

2016

David M. Brandman, et al. Rapid Calibration of an intracortical brain-computer interface for people with tetraplegia.  Journal of Neural Engineering (2016)

C Lawrence et al.  Lupus-related single nucleotide polymorphisms and risk of diffuse large B-cell lymphoma.  Lupus Science & Medicine 4 (1), e000187.

C Lawrence et al.  Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.  Nature Communications 7, 10933

Charles Lawrence et al. A prospective study of sudden cardiac death among children and young adults.  New England Journal of Medicine 374 (25), 2441-2452

MC Burkhart et al.  The discriminative Kalman filter for nonlinear and non-Gaussian sequential Bayesian filtering.  

DM Brandman et al.  Closed Loop Intracortical Brain Computer Interface Control in a person with ALS Using a Filtered Gaussian Process Decoder.  Annals of Neurology 80, S170-S171.  

A Guang, F Zapata, M Howison, CE Lawrence, CW Dunn. An integrated perspective on Phylogenetic workflows.  Trends in Ecology and Evolution 31, (2), 116-126.

MI Miller et al.  MRICloud: Delivering high-throughput MRI neuroinformatics as cloud-based software as a service.  Computing in Science & Engineering 18 (5), 21-35.

MI Miller et al.  Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI.  Neuroimage 125, 12-130.

D. Geman and S. Geman. Science in the age of selfies. PNAS, vol. 113(34), 2016, 9384– 9387.

2015

Donald Geman, Stuart Geman, Neil Hallonquist, Laurent Younes:  Visual Turing test for computer vision systems.  Proc. Natl. Acad. Sci. USA 112(12): 3618-3623 (2015)

A. Amarasingham, S. Geman, and M. Harrison. Ambiguity and non-identifiability in the statistical analysis of neural codes. PNAS, vol. 112(20), 2015, 6455–6460.  

MT Harrison, A Amarasingham and W Truccolo.  Spatiotemporal conditional inference and hypothesis tests for neural ensemble spiking precision.  Neural Computation 27 (1), 104-150 (2018)

C Lawrence et al.  Analysis of heritability and shared heritability based on genome-wide association studies for 13 cancer types.  JNCI: Journal of the  National Cancer Institute 107 (12).

JM Urban, J Bliss, CD Lawrence, SA Gerbi.  Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION.  

A Qiu, S Mori, MI Miller.  Diffusion tensor imaging for understanding brain development in early life.  Annual Review of Psychology 66, 853-876.

M I Miller et al.  Relationship of medial temporal lobe atrophy, APOE genotype, and cognitive research in preclinical Alzheimers disease.  Human Brain Mapping 36 (7), 2826-2841

MI Miller, A Trouve, L Younes.  Hamiltonian systems and optimal control in computational anatomy:  100 years since D'Arcy Thompson.  Annual Review of Biomedical Engineering 17, 447-509.  

Amygdalar atrophy in symptomatic Alzheimer's disease based on diffeomorphometry: the BIOCARD Cohort.  Neurobiology of Aging 36, S3-S10.