Publications

 Recent Publications

  1. Doris SM, Smith DR, Beamesderfer JN, Raphael BJ, Nathanson JA and Gerbi SA (2015) Universal and domain-specific sequences in 23S-28S ribosomal RNA identified by computational phylogenetics, RNA21: 1719-1730. (PMID: 26283689; PMCID: PMC4574749)
  2. Yamamoto Y, Bliss J and Gerbi SA (2015) Whole organism genome editing: Targeted large DNA insertion via ObLiGaRe nonhomologous end-joining in vivo capture.  G3: Genes/Genomes/Genetics 5: 1843-1847. 
  3. Gerbi SA (2015) Beginning at the end: DNA replication within the telomere. Journal of Cell Biology 210: 177-179. 
  4. Urban JM,  Foulk MS, Casella C and  Gerbi SA (2015) The hunt for origins of DNA replication in multicellular eukaryotes. F1000 7:30 (ePub). 
  5. Urban JM, Bliss J, Lawrence CE and  Gerbi SA (2015) Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION. bioRxiv doi: http://dx.doi.org/10.1101/019281
  6. Luan Lin, Deborah Khider, Lorraine E. Lisiecki, and Charles E. Lawrence (2014) Probabilistic sequence alignment of stratigraphic records.  Paleoceanography, 29(10): 976-9898, DOI: 10.1002/2014PA002713
  7. Ruggieri, Eric, Lawrence, C. E. (2014)  The Bayesian Change Point and Variable Selection Algorithm: Application to the δ18O Proxy Record of the Plio-Pleistocene.  Journal of Computational and Graphical Statistics, Volume 23, Number 1, Pages 87–110 DOI:10.1080/10618600.2012.707852
  8. Georges St. Laurent, Michael R. Tackett, Sergey Nechki, Dmitry Shtokalo, Denis Antonets, Yiannis A. Savva, Rachel Maloney, Philipp Kapranov, Charles E. Lawrence, and Robert A. Reenan (2013)  Genome-Wide Analysis of A-to-I RNA Editing via Single Molecule Sequencing in Drosophila Nature Structural and Molecular  Biology, 20(11):1333-9. doi: 10.1038/nsmb.2675.
  9. Lauren A. Sugden, Michael R. Tackett, Yiannis A. Savva, William A. Thompson, Charles E. Lawrence (2013) Assessing the validity and reproducibility of genome scale predictions, Bioinformatics, 15;29(22):2844-51. doi: 10.1093/bioinformatics/btt508 Vol. 29 no. 22.
  10. Yiannis A. Savva, James E.C Jepson, Asli Sahin, Arthur U. Sugden, Jacquelyn S. Dorsky, Lauren Alpert, Charles Lawrence, Robert A. Reenan (2012)  Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behavior in Drosophila,  Nature Communications   3:790 | DOI: 10.1038/ncomms1789 | www.nature.com/naturecommunications 
  11. Eric Ruggieri, and Charles E. Lawrence, On efficient calculations for Bayesian variable selection, (2012) , Computational Statistics and Data Analysis, 56: 1319-1332, doi:10.1016/j.csda.2011.09.026
  12. Donglai Wei, Lauren V. Alpert and Charles E. Lawrence (2011) RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences. Bioinformatics, Vol. 27 no. 18, pages 2486–2493 doi:10.1093/bioinformatics/btr421