| [59] | Russell J. Turner, Kabir Chaturvedi, Nathan J. Edwards, Daniel Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail, "Visualization challenges for a new cyberpharmaceutical computing paradigm", In IEEE 2001 symposium on parallel and large-data visualization and graphics, IEEE Press, San Diego, California, pp. 7-18, 2001. [bib] [pdf] |
| [58] | Russell Schwartz, Sorin Istrail, Jonathan King, "Frequencies of amino-acid strings in globular proteins sequences indicate suppression of blocks of consecutive hydrophobic residues", In Protein Science, vol. 10, pp. 1023-1031, 2001. [bib] [pdf] |
| [57] | M. Li, Ross Lippert, Russell Schwartz, Michael Waterman, Sorin Istrail, "Haplotype Reconstruction from SNP Alignment", Celera Genomics, 2001. [bib] |
| [56] | Giuseppe Lancia, Robert Carr, Brian Walenz, Sorin Istrail, "101 Optimal PDB Structure Alignments: A Branch-and-Cut Algorithm for the Maximum Contact Map Overlap Problem", In Fifth International Conference on Research on Computational Biology, (RECOMB01), ACM Press, pp. 201-211, 2001. [bib] [pdf] |
| [55] | Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross Lippert, Russell Schwartz, "SNPs Problems: Complexity and Algorithms", In 3rd European Symposium on Algorithms, (EAS01), Springer, vol. 2161, pp. 182-193, 2001. [bib] [pdf] |
| 2000 | |
| [54] | Sorin Istrail, Alan Hurd, Ross A. Lippert, Brian Walenz, Serafim Batzoglou, John H. Conway, Fredrick W. Peyerl, "Prediction of Self-Assembly of Energetic Tiles and Dominos: Experiments, Mathematics and Software", Sandia Labs, 2000. [bib] [pdf] |
| [53] | Sorin Istrail, "Statistical Mechanics, Three-Dimensionality and NP-Completeness: I. Universality of Intractability of the Partition Functions of the Ising Model Across Non-Planar Lattices", In 32nd ACM Symposium on the Theory of Computing (STOC00), ACM Press, Portland, Oregon, pp. 87-96, 2000. [bib] [pdf] |
| [52] | Debbie Goldman, Sorin Istrail, Giuseppe Lancia, Antonio Piccolboni, Brian Walenz, "Algorithmic Strategies in Combinatorial Chemistry", In ACM-SIAM Symposium on Discrete Algorithms (SODA00), ACM Press, 2000. [bib] [pdf] |
| 1999 | |
| [51] | Russell Schwartz, Sorin Istrail, Jonathan King, "Insights Into the Association of Partially Folded Chains Derived From Lattice Simulation Models", Sandia Labs, 1999. [bib] |
| [50] | Ross A. Lippert, Sorin Istrail, Alan Hurd, "Prediction of Energetic Tiles Self-Assembly", Sandia Labs, 1999. [bib] |
| [49] | Sorin Istrail, Russell Schwartz, Jonathan King, "Lattice Simulations of Aggregation Funnels of Protein Folding", In Journal of Computational Biology, vol. 6, no. 2, 1999. [bib] [pdf] |
| [48] | Deborah Goldman, Sorin Istrail, Christos H. Papadimitriou, "Algorithmic Aspects of Protein Structure Similarity", In IEEE Symposium on Foundations of Computer Science (FOCS99), IEEE Computer Society Press, 1999. [bib] [pdf] |
| [47] | John H. Conway, Sorin Istrail, "Mathematics of Self-Assembly", Sandia Labs, 1999. [bib] |
| [46] | Robert Carr, Giuseppe Lancia, Sorin Istrail, "Branch-and-Bound LP-algorithms for Protein Structure Alignment Based on Contact Map Overlap", Sandia Labs, 1999. [bib] |
| [45] | Serafim Batzoglou, Sorin Istrail, "Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem", In 10th Conference on Combinatorial Pattern Matching (CPM99), Springer, Warwick, England, 1999. [bib] [pdf] |
| 1998 | |
| [44] | Sorin Istrail, R. Ravi, "What is a Good Objective for Multiple Sequence Alignment?", Sandia Labs, 1998. [bib] |
| [43] | Sorin Istrail, "Multiple Sequence Alignment and Voting Paradoxes", Sandia Labs, 1998. [bib] |
| 1997 | |
| [42] | William E. Hart, Sorin Istrail, "Robust Proofs of NP-Hardness for Protein Folding: General Lattices and Energy Potentials", In Journal of Computational Biology, vol. 4, no. 1, pp. 1-22, 1997. [bib] [pdf] |
| [41] | William E. Hart, Sorin Istrail, "Lattice and Off-Lattice Side Chain Models of Protein Folding: Linear Time Structure Prediction Better than 86% of Optimal", In First International Conference on Computational Molecular Biology, (RECOMB97), ACM Press, Santa Fe, NM, USA, pp. 137-146, 1997. [bib] [pdf] |
| 1996 | |
| [40] | Sorin Istrail, "Approximations Algorithms on Matroids Based on Cycle-Bases and Applications", Sandia Labs, 1996. [bib] |
| [39] | William E. Hart, Sorin Istrail, "Fast Protein Folding in the Hydrophobic-Hydrophilic Model Within Three-eighths of Optimal", In Journal of Computational Biology, vol. 3, no. 1, pp. 53-96, 1996. [bib] [pdf] |
| [38] | William E. Hart, Sorin Istrail, "Invariant Patterns in Crystal Lattices: Implications for Protein Folding Algorithms", In 7th Conference on Combinatorial Pattern Matching (CPM96), Springer, pp. 288-303, 1996. [bib] [pdf] |
| 1995 | |
| [37] | William E. Hart, Sorin Istrail, "Fast Protein Folding in the Hydrophobic-Hydrophilic Model Within Three-eighths of Optimal", In 27th Annual ACM Symposium on Theory of Computation (STOC95), ACM Press, pp. 157-168, 1995. [bib] [pdf] |
| [36] | William E. Hart, Sorin Istrail, "Crystallographical universal approximation: A complexity theory of protein folding algorithms for crystal lattices", Sandia Labs, 1995. [bib] |
| [35] | David Greenberg, Sorin Istrail, "Physical Mapping by STS Hybridization: Algorithmic Strategies and the Challenge of Software Evaluation", In Journal of Computational Biology, vol. 2, pp. 219-274, 1995. [bib] [pdf] |
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