Genomics of Disease | The Istrail Laboratory of Brown University

Building a Programming Language for Genomics

Research

This work was funded by the National Science Foundation

Research themes:

Bioinformatics Workflows
Genomics Tools Libraries
Integrative Road Maps
Automatic Annotation of Genomes

People: Michael Gaiman, Eric Koskinen, Zach Schubert

Publications:

R. Lippert, X. Zhao, L. Florea, C. Mobarry, S. Istrail (2004), Finding anchors for genomic sequence comparison, Proceedings of the 8th Annual International Conference on Research in Computational Biology (RECOMB04), ACM Press 2004
Sorin Istrail, Liliana Florea, Bjarni V. Halld\'orsson, Oliver Kohlbacher, Russell S. Schwartz, Von Bing Yap, Jonathan Yewdell, Stephen Hoffman, Comparative Immuno-Peptidomics of Humans and their Pathogens, Proceedings of the National Academy of Sciences, 2004.
Sorin Istrail, Granger G. Sutton, Liliana Florea, Aaron L. Halpern, Clark M. Mobarry, Ross Lippert, Brian Walenz, Hagit Shatkay, Ian Dew, Jason R. Miller, Michael J. Flanigan, Nathan J. Edwards, Randall Bolanos, Daniel Fasulo, Bjarni V. Halldorsson, Sridhar Hannenhalli, Russell Turner, Shibu Yooseph, Fu Lu, Deborah R. Nusskern, Bixiong Chris Shue, Xiangqun Holly Zheng, Fei Zhong, Arthur L. Delcher, Daniel H. Huson, Saul A. Kravitz, Laurent Mouchard, Knut Reinert, Karin A. Remington, Andrew G. Clark, Michael S. Waterman, Evan E. Eichler, Mark D. Adams, Michael W. Hunkapiller, Eugene W. Myers, J. Craig Venter Whole Genome Shotgun Assembly and Comparison of Human Genome Assemblies, Proceedings of the National Academy of Sciences, 101:1916-21, 2004
J. Craig Venter and M. D. Adams and E. W. Myers and P. Li and R. J. Mural and G. G. Sutton and H. O. Smith and M. Yandell and C. A. Evans and R. A. Holt and J. D. Gocayne and P. Amanatides and R. M. Ballew and D. H. Huson and J. Russo Wortman and Q. Zhang and C. Kodira and X. H. Zheng and L. Chen and M. Skupski and G. Subramanian and P. D. Thomas and J. Zhang and G. L. Gabor Miklos and C. Nelson and S. Broder and A. G. Clark and J. Nadeau and V. A. McKusick and N. Zinder and A. J. Levine and R. J. Roberts and M. Simon and C. Slayman and M. Hunkapiller and R. Bolanos and A. Delcher and I. Dew and D. Fasulo and M. Flanigan and L. Florea and A. Halpern and S. Hannenhalli and S. Kravitz and S. Levy and C. Mobarry and K. Reinert and K. Remington and J. Abu-Threideh and E. Beasley and K. Biddick and V. Bonazzi and R. Brandon and M. Cargill and I. Chandramouliswaran and R. Charlab and K. Chaturvedi and Z. Deng and V. Di Francesco and P. Dunn and K. Eilbeck and C. Evangelista and A. E. Gabrielian and W. Gan and W. Ge and F. Gong and Z. Gu and P. Guan and T. A. Heiman and M. E. Higgins and R-R. Ji and Z. Ke and K. A. Ketchum and Z. Lai and Y. Lei and Z. Li and J. Li and Y. Liang and X. Lin and F. Lu and G. V. Merkulov and N. Milshina and H. M. Moore and A. K Naik and V. A. Narayan and B. Neelam and D. Nusskern and D. B. Rusch and S. Salzberg and W. Shao and B. Shue and J. Sun and Z. Yuan Wang and A. Wang and X. Wang and J. Wang and M-H. Wei and R. Wides and C. Xiao and C. Yan and A. Yao and J. Ye and M. Zhan and W. Zhang and H. Zhang and Q. Zhao and L. Zheng and F. Zhong and W. Zhong and S. C. Zhu and S. Zhao and D. Gilbert and S. Baumhueter and G. Spier and C. Carter and A. Cravchik and T. Woodage and F. Ali and H. An and A. Awe and D. Baldwin and H. Baden and M. Barnstead and I. Barrow and K. Beeson and D. Busam and A. Carver and A. Center and M. Lai Cheng and L. Curry and S. Danaher and L. Davenport and R. Desilets and S. Dietz and K. Dodson and L. Doup and S. Ferriera and N. Garg and A. Gluecksmann and B. Hart and J. Haynes and C. Haynes and C. Heiner and S. Hladun and D. Hostin and J. Houck and T. Howland a. Chinyere Ibegwam and J. Johnson and F. Kalush and L. Kline and S. Koduru and A. Love and F. Mann and D. May and S. McCawley and T. McIntosh and I. McMullen and M. Moy and L. Moy and B. Murphy and K. Nelson and C. Pfannkoch and E. Pratts and V. Puri and H. Qureshi and M. Reardon and R. Rodriguez and Y-H. Rogers and D. Romblad and B. Ruhfel and R. Scott and C. Sitter and M. Smallwood and E. Stewart and R. Strong and E. Suh and R. Thomas and N. Ni Tint and S. Tse and C. Vech and G. Wang and J. Wetter and S. Williams and M. Williams and S. Windsor and E. Winn-Deen and K. Wolfe and J. Zaveri and K. Zaveri and J. F. Abril and R. Guigo " and M. J. Campbell and K. V. Sjolander and B. Karlak and A. Kejariwal and H. Mi and B. Lazareva and T. Hatton and A. Narechania and K. Diemer and A. Muruganujan and N. Guo and S. Sato and V. Bafna and S. Istrail and R. Lippert and R. Schwartz and B. Walenz and S. Yooseph and D. Allen and A. B. and J. Baxendale and L. Blick and M. Caminha and J. Carnes-Stine and P. Caulk and Y-H. Chiang and M. Coyne and C. Dahlke and A. Deslattes Mays and M. Dombroski and M. Donnelly and D. Ely and S. Esparham and C. Fosler and H. Gire and S. Glanowski and K. Glasser and A. Glodek and M. Gorokhov and K. Graham and B. Gropman and M. Harris and J. Heil and S. Henderson and J. Hoover and D. Jennings and C. Jordan and J. Jordan and J. Kasha and L. Kagan and C. Kraft and A. Levitsky and M. Lewis and X. Liu and J. Lopez and D. Ma and W. Majoros and J. McDaniel and S. Murphy and M. Newman and T. Nguyen and N. Nguyen and M. Nodell and S. Pan and J. Peck and W. Rowe and R. Sanders and J. Scott and M. Simpson and T. Smith and A. Sprague and T. Stockwell and R. Turner and E. Venter and M. Wang and M. Wen and D. Wu and M. Wu and A. Xia and A. Zandieh and X. Zhu, The {S}equence of the {H}uman {G}enome, Science, vol 291, pp.1145-1434, 2001