Code + Data Repository

In this page we link code, data or other additional information associated with various publications. Enjoy!


Appendix for Treatments for Primary Squamous Cell Carcinoma

AppendixTreatments for primary squamous cell carcinoma and squamous cell carcinoma in situ of the skin: a systematic review and network meta-analysis

Technical Appendix for Urinary Incontinence (Annals of Internal Medicine)

Network Meta-Analysis Model and Code 
Associated papers: Pharmacologic and Nonpharmacologic Treatments for Urinary Incontinence in Women: A Systematic Review and Network Meta-analysis of Clinical Outcome

Technical Appendix for NMSC

Network Meta-Analysis Model and Code 
Associated papersAppendix G. Network Meta-Analysis Model and Code     

ACL 2014 (irony)

Data (& code) for our ACL 2014 paper 
Associated papersHumans Require Context to Infer Ironic Intent (so Computers Probably do, too)

JAGS code and R data for multinomial network model

JAGS code for multinomial network model for the example using partial data (five outcomes, three treatments) 
Associated papersBayesian network meta-analysis for unordered categorical outcomes with incomplete data

JAS code

Source code for our Joint, Additive, Sequential model of topics and speech acts. 
Associated papersA Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication

Online physician reviews

A corpus of (50,000+) online reviews of physicians across multiple aspects of care. 
Associated papersWhat Affects Patient (Dis)satisfaction? Analyzing Online Doctor Ratings with a Joint Topic-Sentiment Model 

Imbalanced dataset

This is a collection of 35 imbalanced binary classification datasets. These have been preprocessed into feature-vectors (and ultimately into SVM-light style sparse-formatted files). 
Associated papersImproving Class Probability Estimates for Imbalanced Data

Corpus of encoded, imbalanced binary classification datasets

A set of 35 datasets used in our work on class probability estimates in imbalanced scenarios. 
Associated papersClass Probability Estimates are Unreliable for Imbalanced Data (and How to Fix Them)

Code for all-subsets meta-analysis

Stata c-plug-in to perform all-subsets meta-analysis. 
Associated papersGOSH – a graphical display of study heterogeneity

Infinite Jest (annotated)

The text of infinite jest annotated with sub-narratives. 
Associated papersMultiple narrative disentanglement: Unraveling infinite jest

Multiple time points

Stata code for "Meta-analysis of outcomes reported at multiple time points: a multivariate approach" 
Associated papersMeta-analysis of effect sizes reported at multiple time points: A multivariate approach